The department was informed about the policy the night before it was announced in the Budget.
The move has been branded “disastrous” by the National Farmers’ Union (NFU), with some farmers warning it would decimate the countryside.
Defra suggested softening the policy to exempt some older people, possibly those over the age of 80.
The April 2026 start for the policy means they may not have time to make use of existing rules to skip inheritance tax by passing on an asset seven years before death.
But this suggestion has been dismissed by the Treasury, which said it had taken “a fair and balanced approach”.
Since its introduction in 1984, agricultural property relief (APR) has allowed small family farms – including land used for crops or rearing animals, as well as farm buildings, cottages and houses – to be exempt from inheritance tax.
The Treasury said 40% of APR had been going to “the 7% wealthiest claimants”, and that it had “made a difficult decision to ensure the relief is fiscally sustainable”.
It put this against a backdrop of “public services crumbling [and] a £22bn fiscal hole inherited from the previous government”.
“Around 500 claims each year will be impacted and farm-owning couples can pass on up to £3m without paying any inheritance tax – this is a fair and balanced approach,” a spokesperson added.
There are divisions in government over the change.
Some ministers believe it will only have an impact on relatively wealthy farmers – a couple using all their inheritance tax benefits will be able to pass on a £3m farm tax free. Any inheritance tax charge on farms can be paid over 10 years.
But other ministers believe the chancellor is in danger of undermining Labour’s relations with rural Britain while raising a relatively small amount of money.
The change could raise around £560m.
Some sources in government have expressed concerns that the chancellor is creating unnecessary grief over a change that is not, in relative terms, a huge money spinner.
There are concerns that the change – which has proved controversial among farmers since its announcement – could become “totemic” in rural Britain.
The NFU warned it would “snatch away the next generation’s ability to carry on producing British food” and see farmers forced to sell land to pay the tax.
A rally to protest against the plan will be held in Whitehall next Tuesday.
There is also a dispute around the figures used to calculate the changes.
Farmers leaders have been told by Defra that the figures come from the Treasury and not their department.
Tom Bradshaw, the president of the NFU, said that Defra figures showed the changes would have an impact on 66% of estates.
The Treasury said the figure was 28%.